Delete rows

  $sql = $wpdb->prepare("DELETE FROM {$wpdb->base_prefix}tbl_my_table WHERE user_id = %d", $user_id);
  if (current_user_can('administrator'))
    $wpdb->show_errors();
  $wpdb->query($sql);

Delete all rows

  $sql = "DELETE FROM {$wpdb->base_prefix}tbl_my_table";
  if (current_user_can('administrator'))
    $wpdb->show_errors();
  $wpdb->query($sql);

Delete based on DateTime

  //----- DELETE OLD EVENTS -----
  $sql = "DELETE FROM {$wpdb->base_prefix}my_table_name WHERE EventDateTime < DATE_SUB(now(), INTERVAL 90 DAY)";
  if (current_user_can('administrator'))
    $wpdb->show_errors();
  $wpdb->query($sql);

  //Also:
  //INTERVAL 1 MONTH
  //INTERVAL 1 HOUR
  //etc